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    New at CFDE Training

    Explore our latest tutorial additions and discover lessons across a broad spectrum of technical topics.

    Learn More
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    GWAS in the Cloud

    Analyse genetic variants to obtain correlations to phenotypes and visualize using a Manhattan plot.

    Get Started
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    RNAseq on Cavatica

    Learn to perform differential gene expression analysis using Kids First cancer cohorts on Cavatica.

    Get Started
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    Amazon Web Services

    Learn to connect, setup and conduct analysis using Amazon's cloud computing services.

    Get Started
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    Google Cloud Platform

    Learn to setup, download NCBI's SRA datasets and conduct analysis using Google's cloud computing services.

    Get Started
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    Snakemake Workflows

    Learn to create reproducible and scalable data analyses using the snakemake workflow management system.

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    CFDE Data Portal

    Discover multiple datasets across all Common Fund programs and generate data manifests all in one single search.

    Get started

Welcome to CFDE Training Resources!

We are working to make Common Fund data more accessible to researchers and clinicians like you!

Choose from our growing list of tutorials and resources to learn how to perform bioinformatic analyses and access data.

Workshops

Check out our events calendar for upcoming workshops !

A Hands-On Intro to Conda
March 18, 2021  •  Virtual Workshop
Workshop Resources:  workshop notes

A Hands-On Intro to Conda
March 4, 2021  •  Virtual Workshop
Workshop Resources:  workshop notes

Introduction to Amazon Web Services / Elastic Cloud Computing
Feb 25, 2021  •  Virtual Workshop
Workshop Resources:  workshop notes

Introduction to Amazon Web Services / Elastic Cloud Computing
Jan 29, 2021  •  Virtual Workshop
Workshop Resources:  workshop notes

Introduction to the Kids First Data Resource Portal
Dec 17, 2020  •  Virtual Workshop
Workshop Resources:  Setup  •  Explore  •  Queries

Introduction to Amazon Web Services / Elastic Cloud Computing
Dec 1, 2020  •  Virtual Workshop
Workshop Resources:  workshop notes

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About CFDE

The Common Fund Data Ecosystem (CFDE) Coordination Center (CC) is a NIH Common Fund effort to identify and solve issues that inhibit data access and reuse across Common Fund programs.

By connecting the data and making them more accessible, the CFDE aims to enable novel scientific research that was not possible before, including hypothesis generation, discovery, and validation.